Cheap Apartments for Rent in the Mission Bay Neighborhood of San Diego, CA from $1,000 (39 Rentals)

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Search the lowest-cost Apartments available for rent right now in the Mission Bay area of San Diego.

property at 3304 Baltimore St

$1,299

Total Monthly Price

Total Monthly Price

Base Rent
$1,299

Total Monthly Price
$1,299

1 Bedroom, 1 Bath Home for Rent

Available Now

3304 Baltimore St

San DiegoCA92117
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Cedar Shores
$1,672 - $2,856
Total Monthly Price

Total Monthly Price

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$1,672 - $2,856

Total Monthly Price
Varies
Studio to 2 Bedroom Apartments Available Aug 7

Cedar Shores

2151 Oliver AveSan Diego, CA 92109
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2043 Reed Ave, Unit 2043
$1,750
Total Monthly Price

Total Monthly Price

Base Rent
$1,750

Total Monthly Price
$1,750
2 Bedroom Apartment Available Aug 1

2043 Reed Ave, Unit 2043

2043 Reed AveSan Diego, CA 92109
Affordability

Moving to North County San Diego: Costs, Commutes, and Culture

From surf culture to family-friendly neighborhoods, discover the best North County San Diego areas to rent and what they’re like day-to-day.

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Elan Baylofts
$2,345 - $3,775
Total Monthly Price

Total Monthly Price

Base Rent
$2,345 - $3,775

Total Monthly Price
$2,345 - $3,775
1 to 3 Bedroom Apartments Available Sep 8

Elan Baylofts

1450-1472 Pacific Beach DrSan Diego, CA 92109
Affordability
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property at 2512 Clairemont Dr

$2,795

Total Monthly Price

Total Monthly Price

Base Rent
$2,795

Total Monthly Price
$2,795

2 Bedroom, 1 Bath Condo for Rent

Available Now

2512 Clairemont Dr, Unit 216

2512 Clairemont Dr
San DiegoCA92117

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Find income-restricted rentals and housing subsidies. Explore government programs designed to help low-income families secure stable, affordable housing.

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1849-1867 Morena Blvd
1 Bedroom Apartments

1849-1867 Morena Blvd

1849-1867 Morena BlvdSan Diego, CA 92110
  • Utilities Included
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The Pacific Lamont
1 to 2 Bedroom Apartments

The Pacific Lamont

4040 Lamont StSan Diego, CA 92109
  • Utilities Included
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Casa Riviera
Studio to 2 Bedroom Apartments

Casa Riviera

3773-3777 Haines StSan Diego, CA 92109
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4117 1/2 Ingraham St.
2 Bedroom Apartments

4117 1/2 Ingraham St.

4105-4123 Ingraham StSan Diego, CA 92109
  • Utilities Included
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Bay Park Apartments
1 to 2 Bedroom Apartments

Bay Park Apartments

2027-2041 Morena BlvdSan Diego, CA 92110
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1128 Felspar Street
Studio to 1 Bedroom Apartments

1128 Felspar Street

1128 Felspar StSan Diego, CA 92109
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Sail Bay  Apartments
Studio to 2 Bedroom Apartments

Sail Bay Apartments

1327 Pacific Beach DrSan Diego, CA 92109

San Diego's Best Affordable Neighborhoods

Learn about San Diego and the best places to live with original content written by our , Local Expert Hayden Goldberg

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Bahia Jewell
1 Bedroom Apartments

Bahia Jewell

4430 Jewell StSan Diego, CA 92109
  • Utilities Included
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(zzz-7/12) 1452
Studio to 3 Bedroom Apartments

(zzz-7/12) 1452

1452 Grand AveSan Diego, CA 92109
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4256 Noyes St
Studio to 2 Bedroom Apartments

4256 Noyes St

4256 Noyes StSan Diego, CA 92109
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Viking Pacific
1 Bedroom Apartments

Viking Pacific

1156 Hornblend StSan Diego, CA 92109
  • Utilities Included
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Royal Reed Apartments
Studio to 2 Bedroom Apartments

Royal Reed Apartments

1488 Reed AveSan Diego, CA 92109
  • Utilities Included
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1133 Grand Ave
1 Bedroom Apartments

1133 Grand Ave

1133 Grand AveSan Diego, CA 92109
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Ocean Palms Apartments
1 to 2 Bedroom Apartments

Ocean Palms Apartments

1346 Grand AveSan Diego, CA 92109
  • Utilities Included
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Riviera Marina
2 to 3 Bedroom Apartments

Riviera Marina

3929-3933 Gresham StSan Diego, CA 92109

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From theft to fire to water damage, the unexpected can happen to any renter. Discover why renters insurance is one of the smartest and most affordable investments you can make as a tenant.

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1327 Grand Ave
Studio to 2 Bedroom Apartments

1327 Grand Ave

1327 Grand AveSan Diego, CA 92109
  • Utilities Included

Mission Bay, San Diego, CA Local Guide

Cheapest Available Mission Bay Apartments for Rent

 

The cheapest available apartment rental in the Mission Bay area of San Diego, CA is a Studio unit found at The Villager Bay Park priced from $1,995. 1360 Hornblend St has the second lowest priced unit, which is a 1 Bed apartment currently listed from $2,000. Here are the most affordable Mission Bay apartments for rent in San Diego, CA:

Apartment ListingModel NameBed/BathPriced From
The Villager Bay Park0BR/1.0BAStudio,1BA$1,995
1360 Hornblend St1 Bed 1 Bath1BR,1BA$2,000
Bay ApartmentsDesign EA PremierStudio,1BA$2,220
AVA Pacific BeachS1Studio,1BA$2,251
Viking Pacific1BR/1.0BA1BR,1BA$2,500
2950 Bayside Ln1 Bedroom 29501BR,1BA$2,600
Elan Pacific Lofts2x12BR,1BA$3,295

Best Value Apartments for Rent in Mission Bay, CA

As of July 26, 2026 the best value apartment in the Mission Bay area is the $4.81 price per square foot 2313 Morena Blvd Model at 2313 Morena Blvd in the in the Bay Park neighborhood starting from $3,850. The second greatest value Mission Bay apartment is the 2x1 Model at Elan Pacific Lofts starting at $3,295 with a $4.71 price per square foot in the Bay Ho neighborhood. Here is today’s list of the best values for Mission Bay apartments based on price per square foot:

Apartment ListingModel NameBed/BathPrice Per Sq.Ft.
2313 Morena Blvd2313 Morena Blvd2BR,1BA$4.81
Elan Pacific Lofts2x12BR,1BA$4.71
Viking Pacific1BR/1.0BA1BR,1BA$3.97
1360 Hornblend St1 Bed 1 Bath1BR,1BA$3.33
Bay ApartmentsDesign EA PremierStudio ,1BA$3.70
2950 Bayside Ln1 Bedroom 29501BR,1BA$4.73
The Villager Bay Park0BR/1.0BAStudio ,1BA$3.99
AVA Pacific BeachS1Studio ,1BA$5.56

Don't Settle: How to Negotiate Your Apartment Lease and Save Money

Discover the insider tips from an attorney and real estate agent on how to negotiate your next apartment lease. Find out what's on the table and what's not, so you can save money and get the best terms possible.

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The Student Renter's Ultimate Guide to Finding the Perfect San Diego Neighborhood to Rent

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From the letter A all the way to the letter Z, the Real Estate and Rental Term Glossary from the content team at ApartmentHomeLiving.com provides our visitors and shoppers with a little clarity and helpful guidance in navigating the real estate world through definitions and explainers for the top subjects and terms that someone may come across during the leasing, buying, or selling process.

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Pet Friendly Lifestyle
Mission Bay, San Diego, CA

Ranked #96

Among cities in California for Apartment listings with Pet Friendly Amenities.

Pet Friendliness Lifestyle Score

4.0
Pet Friendly

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Frequently Asked Questions about Cheap Mission Bay Apartments

What is the Cheapest Studio apartment in Mission Bay?

Currently the most affordable Cheap Studio Apartment in Mission Bay is at The Villager Bay Park listed at $1,995.

How much is rent for a Cheap One Bedroom Mission Bay Apartment?

The lowest price for a Cheap One Bedroom Mission Bay Apartment is $2,000 at 1360 Hornblend St.

What is the lowest price for a Cheap Two Bedroom Mission Bay Apartment for rent?

Today's best deal for a Cheap Two Bedroom Apartment in Mission Bay is starting from $3,295 at Elan Pacific Lofts.

Expert Rental Resources

The rental experts at ApartmentHomeLiving.com provide you with top advice, tools, and tips for understanding the leasing process and finding the perfect rental. Here are a few helpful rental and leasing articles from our experts to guide you on your search.

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