
Cheap Homes for Rent in the Mission Bay Neighborhood of San Diego, CA from $1,299 (8 Rentals)
Search the lowest-cost Homes available for rent right now in the Mission Bay area of San Diego.


930 Thomas Ave, Unit 6

1931 Fortuna Ave

3920.5 Sequoia St
Moving to North County San Diego: Costs, Commutes, and Culture
From surf culture to family-friendly neighborhoods, discover the best North County San Diego areas to rent and what they’re like day-to-day.

1157 Grand Ave, Unit 1159

1049 Felspar St, Unit 24

728 Ormond Ct

2530 Clairemont Dr
Rent According to Income: A Look at Income-Restricted Rentals
Find income-restricted rentals and housing subsidies. Explore government programs designed to help low-income families secure stable, affordable housing.
Mission Bay, San Diego, CA Local Guide

How much does it cost to rent a home in Mission Bay?
| Bedroom | Average Rent | Cheapest Rent | Highest Rent |
|---|---|---|---|
| Mission Bay 2 Bedroom Homes for Rent | $5,989 | $3,875 | $10,000+ |
| Mission Bay 3 Bedroom Homes for Rent | $8,126 | $4,195 | $10,000+ |
| Mission Bay 4 Bedroom Homes for Rent | $8,858 | $5,795 | $10,000+ |
| Mission Bay 5 Bedroom Homes for Rent | $14,500 | $10,000 | $10,000+ |
| Mission Bay 6 Bedroom Homes for Rent | $10,800 | $10,000 | $10,000+ |
Browse Homes for Rent in this Neighborhood
There are currently 8 rentals with your search options within a 2 mile radius of the Mission Bay Neighborhood of San Diego, CA.
Explore San Diego
Mission Bay, San Diego, CA Local Guide
- Nearby San Diego neighborhoods
- Nearby Cities
- ZIP codes
- Local Counties
- School Districts
Cheapest Available Mission Bay Apartments for Rent
 The cheapest available apartment rental in the Mission Bay area of San Diego, CA is a Studio unit found at Bay Apartments priced from $2,130. Elan Pacific Lofts has the second lowest priced unit, which is a 2 Beds apartment currently listed from $3,095. Here are the most affordable Mission Bay apartments for rent in San Diego, CA:
| Apartment Listing | Model Name | Bed/Bath | Priced From |
|---|---|---|---|
| Bay Apartments | Design EA Premier | Studio,1BA | $2,130 |
| Elan Pacific Lofts | 2x1 | 2BR,1BA | $3,095 |
| The Seaton Apartments | A2 | 1BR,1BA | $3,458 |
Best Value Apartments for Rent in Mission Bay, CA
As of August 24, 2026 the best value apartment in the Mission Bay area is the $5.16 price per square foot 3261 Ocean Front Walk Model at 3261 Ocean Front Walk, Unit 2B in the in the Mission Beach neighborhood starting from $6,195. The second greatest value Mission Bay apartment is the A1 Model at The Seaton Apartments starting at $3,618 with a $4.49 price per square foot in the Balboa Park neighborhood. Here is today’s list of the best values for Mission Bay apartments based on price per square foot:
| Apartment Listing | Model Name | Bed/Bath | Price Per Sq.Ft. |
|---|---|---|---|
| 3261 Ocean Front Walk, Unit 2B | 3261 Ocean Front Walk | 3BR,2BA | $5.16 |
| The Seaton Apartments | A1 | 1BR,1BA | $4.49 |
| 1919 Reed Ave, Unit 1919 Reed Avenue Unit C | 1919 Reed Ave | 2BR,2BA | $4.31 |
| 2313 Morena Blvd | 2313 Morena Blvd | 2BR,1BA | $4.81 |
| Elan Pacific Lofts | 2x1 | 2BR,1BA | $4.42 |
| 734-740.5 Jamaica Court | 2/1 | 2BR,1BA | $5.72 |
| Bay Apartments | Design EA Premier | Studio ,1BA | $3.55 |
| 3852 Mission Blvd, Unit Unit C | 3852 Mission Blvd | Studio ,1BA | $6.56 |
Don't Settle: How to Negotiate Your Apartment Lease and Save Money
Discover the insider tips from an attorney and real estate agent on how to negotiate your next apartment lease. Find out what's on the table and what's not, so you can save money and get the best terms possible.
Read ArticleThe Student Renter's Ultimate Guide to Finding the Perfect San Diego Neighborhood to Rent
Learn About the Best Neighborhoods to Rent Near College Campuses in San Diego, CA | Find San Diego Off-Campus Student Housing
Read ArticleReal Estate and Rental Term Glossary | ApartmentHomeLiving.com Renter University
From the letter A all the way to the letter Z, the Real Estate and Rental Term Glossary from the content team at ApartmentHomeLiving.com provides our visitors and shoppers with a little clarity and helpful guidance in navigating the real estate world through definitions and explainers for the top subjects and terms that someone may come across during the leasing, buying, or selling process.
Read ArticleQuick Rent Budget Calculator
How much rent can you afford?
The common "Rule of Thumb" is that rent should be no more than 30% of your income. How much is that? Enter your monthly income and click "Calculate My Budget" to find out.
Pet Friendly LifestyleMission Bay, San Diego, CA
Ranked #112
Among cities in California for Apartment listings with Pet Friendly Amenities.
Pet Friendliness Lifestyle Score
4.0Pet Friendly
Frequently Asked Questions about Mission Bay
What type of rentals are currently available in Mission Bay?
There are currently 654 Apartments for Rent in Mission Bay, CA with pricing that ranges from $1,084 to $33,637. There are also 74 Single Family Homes for rent, Condos, and Townhome rentals currently available in Mission Bay ranging from $1,299 to $20,000.
What is the current price range for Rental Homes in Mission Bay?
Today's rental pricing for Homes for Rent, Condos and Townhomes in Mission Bay ranges from $1,299 to $20,000 with an average monthly rent of $6,638.
Expert Rental Resources
The rental experts at ApartmentHomeLiving.com provide you with top advice, tools, and tips for understanding the leasing process and finding the perfect rental. Here are a few helpful rental and leasing articles from our experts to guide you on your search.
Helpful Local Expert Guides

Moving to North County San Diego: Costs, Commutes, and Culture
Written by: Hayden Goldberg
Sun, surf, clean air, healthy lifestyles, and a coastline that seems to stretch as far as the eyes can see.

Ditch the Freeway: San Diego's Best Renting Spots for a Shorter Commute
Written by: Hayden Goldberg
Hey there! I’m Hayden, your ApartmentHomeLiving.com local expert for San Diego.

Your Guide to Picking the Perfect San Diego Neighborhood for Student Renters
Written by: Hayden Goldberg
Choosing the right place to live during your college years can make or break your collegiate experience. My name is Hayden, I’m a San Diego area expert with ApartmentHomeLiving.com and have been in the real estate world for years.

Top 10 Most Affordable Neighborhoods in San Diego: A Local Real Estate Expert Guide
Written by: Hayden Goldberg
Aloha! I’m Hayden, your local San Diego Realtor and relocation expert with ApartmentHomeLiving.com.
Articles, How-To's, and Tips

Rent According to Income: A Look at Income-Restricted Rentals
Written by: Robin Stewart
The idea of affordable housing can be subjective. Every individual is in a different place financially and vocationally. What one may easily afford could be a struggle for someone else.

Practical Tips for Renters: How to Identify a Great Rental and Avoid Red Flags
Written by: Robin Stewart
Renters want to find a great apartment, the right place for them, one that checks all the boxes of location, rental cost, amenities, safety, and more.

First Apartment Regrets: Real Renters Share What They'd Do Differently
Written by: Robin Stewart
Hindsight is 20/20. Live and Learn. With age comes wisdom. We’re familiar with all those expressions, and all of them apply to lessons first-time renters learn.

Renters Insurance 101: What It Is, What It Covers, and Why You Need It
Written by: Robin Stewart
Insurance seems to be a part of life. In some states, having insurance is the law, as is the case for automobile insurance. Renters are no exception.